Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0351Hypothetical protein; Identified by similarity to GB:CAC45660.1. (104 aa)    
Predicted Functional Partners:
SPO2249
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.513
SPO0357
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
     0.474
SPO3068
Hypothetical protein; Identified by similarity to GB:CAC47333.1.
  
     0.462
SPO0353
Identified by match to protein family HMM PF07298.
       0.447
SPO0354
Hypothetical protein; Identified by similarity to PIR:AE3561.
       0.440
SPO2117
Disulfide bond formation protein, DsbB family; Identified by match to protein family HMM PF02600.
  
     0.440
SPO0355
Hypothetical protein; Identified by similarity to GB:AAK25618.1.
       0.430
SPO1265
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
     0.412
citE
Citrate lyase, beta subunit; Identified by similarity to SP:P77770; Belongs to the HpcH/HpaI aldolase family.
       0.406
SPO0884
Membrane protein, putative; Identified by match to protein family HMM PF03824; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.406
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.