STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0355Hypothetical protein; Identified by similarity to GB:AAK25618.1. (342 aa)    
Predicted Functional Partners:
SPO0693
isobutyryl-CoA dehydrogenase; Identified by similarity to GB:AAL17673.1.
 
 0.984
mclA
malyl-CoA lyase; Identified by similarity to GB:AAB58884.1; match to protein family HMM TIGR01588; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.969
SPO1565
Citrate lyase, putative; Identified by similarity to SP:O53078; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.965
citE
Citrate lyase, beta subunit; Identified by similarity to SP:P77770; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.885
ccrA
crotonyl-CoA reductase; Identified by match to protein family HMM PF00107; match to protein family HMM TIGR01751.
 
 
 0.875
SPO0368
methylmalonyl-CoA mutase; Identified by similarity to SP:Q49115; match to protein family HMM PF01642; match to protein family HMM PF02310; match to protein family HMM TIGR00640; match to protein family HMM TIGR00641.
 
  
 0.855
SPO0354
Hypothetical protein; Identified by similarity to PIR:AE3561.
       0.836
SPO0353
Identified by match to protein family HMM PF07298.
  
    0.827
SPO0356
Hypothetical protein; Identified by similarity to GB:BAC61369.1.
       0.786
SPO0357
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
       0.658
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.