Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
luxR-1Autoinducer-binding transcriptional regulator LuxR; Identified by match to protein family HMM PF00196; match to protein family HMM PF03472. (239 aa)    
Predicted Functional Partners:
SPO0372
Autoinducer synthesis protein; Identified by match to protein family HMM PF00765.
 
 
 0.992
SPO3223
Response regulator; Identified by match to protein family HMM PF00072.
  
     0.711
SPO2287
Autoinducer synthesis protein; Identified by match to protein family HMM PF00765.
 
  
 0.654
SPO2107
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.553
SPO0788
Identified by match to protein family HMM PF00753; match to protein family HMM TIGR01409.
    
 
 0.480
SPO1026
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.465
SPO1764
Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196.
 
 
 0.438
ccrA
crotonyl-CoA reductase; Identified by match to protein family HMM PF00107; match to protein family HMM TIGR01751.
       0.429
SPO3038
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
   
  
 0.408
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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