Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0375Identified by match to protein family HMM PF01925. (316 aa)    
Predicted Functional Partners:
SPO0374
Hypothetical protein; Identified by similarity to GB:CAE26256.1.
 
     0.961
SPO0386
Identified by match to protein family HMM PF00582.
 
   
 0.815
SPO0377
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
       0.717
SPO0378
Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
    0.619
SPO0376
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
       0.614
SPO0379
Sugar ABC transporter, periplasmic sugar-binding protein; Identified by match to protein family HMM PF02608.
       0.576
SPO0381
Protease, putative; Identified by match to protein family HMM PF00814.
  
    0.426
SPO0382
nifU domain protein; Identified by match to protein family HMM PF01106.
     
 0.419
SPO0380
Ribosomal-protein-alanine acetyltransferase, putative; Identified by similarity to SP:P09453; match to protein family HMM PF00583.
       0.412
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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