STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0378Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (509 aa)    
Predicted Functional Partners:
SPO0376
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.995
SPO0377
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.994
SPO0379
Sugar ABC transporter, periplasmic sugar-binding protein; Identified by match to protein family HMM PF02608.
 
 0.987
SPO2804
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.979
SPO0650
Sugar ABC transporter, permease protein; Assignment based partly on membership in sugar ABC transporter operon; Belongs to the binding-protein-dependent transport system permease family.
 
 0.978
SPO0649
Sugar ABC transporter, permease protein; Assignment based partly on membership in sugar ABC transporter operon; Belongs to the binding-protein-dependent transport system permease family.
 
 0.977
SPO2805
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.976
SPO2802
Bmp family protein; Identified by match to protein family HMM PF02608.
 
 
 0.928
SPO0648
Bmp family protein.
 
 
 0.927
SPO0651
Sugar ABC transporter, ATP-binding protein.
  
  
 
0.913
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.