STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0380Ribosomal-protein-alanine acetyltransferase, putative; Identified by similarity to SP:P09453; match to protein family HMM PF00583. (137 aa)    
Predicted Functional Partners:
SPO0381
Protease, putative; Identified by match to protein family HMM PF00814.
  
 
 0.889
SPO0382
nifU domain protein; Identified by match to protein family HMM PF01106.
       0.836
SPO0379
Sugar ABC transporter, periplasmic sugar-binding protein; Identified by match to protein family HMM PF02608.
       0.636
SPO0377
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
       0.519
azoR
Acyl carrier protein phosphodiesterase, putative; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family.
       0.501
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.469
SPO0713
ATPase, putative; Displays ATPase and GTPase activities.
 
    0.428
SPO0374
Hypothetical protein; Identified by similarity to GB:CAE26256.1.
       0.413
SPO0375
Identified by match to protein family HMM PF01925.
       0.412
SPO2473
Haloacid dehalogenase, type II, putative; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493.
  
    0.407
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.