Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0386Identified by match to protein family HMM PF00582. (156 aa)    
Predicted Functional Partners:
SPO0374
Hypothetical protein; Identified by similarity to GB:CAE26256.1.
 
     0.816
SPO0375
Identified by match to protein family HMM PF01925.
 
   
 0.815
SPO0385
2-hydroxychromene-2-carboxylate isomerase, putative; Identified by match to protein family HMM PF01323.
       0.773
SPO0387
Membrane protein, putative.
 
     0.744
SPO0388
Aminotransferase, class IV; Identified by match to protein family HMM PF01063.
       0.705
SPO3172
Hypothetical protein; Identified by similarity to GB:BAC46776.1.
  
     0.637
tatA
Twin-arginine translocation protein, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
     0.610
SPO0389
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037.
       0.544
SPO3853
uroporphyrinogen-III synthase, putative; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
    0.477
SPO0390
Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
  
 0.445
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.