STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0432Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738. (148 aa)    
Predicted Functional Partners:
SPO2024
Aminotransferase; 'initially identified as a pseudogene, expression verified by proteomics'.
  
  
 0.665
ccoN-1
Cytochrome c oxidase, cbb3-type, subunit I; Identified by similarity to SP:P98059; match to protein family HMM PF00115; match to protein family HMM TIGR00780; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.547
SPO0431
Hypothetical protein; Identified by similarity to PIR:E82090.
       0.546
SPO1089
Hypothetical protein; Identified by similarity to GB:AAN33382.1; match to protein family HMM PF04325.
   
    0.516
SPO2944
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.516
SPO0589
Oxidoreductase, NAD-binding/iron-sulfur cluster-binding protein.
  
  
 0.503
SPO3522
Iron-sulfur-binding protein, RdxA/RdxB/FixG family; Identified by similarity to SP:P18396; match to protein family HMM PF00037.
  
  
 0.475
SPO1683
Hypothetical protein; Identified by similarity to GB:AAK22449.1.
  
  
 0.466
ccoO-1
Cytochrome c oxidase, cbb3-type, subunit II; Identified by match to protein family HMM PF02433; match to protein family HMM TIGR00781.
  
    0.439
ccoP-1
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
  
 0.435
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.