Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO0432Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738. (148 aa)    
Predicted Functional Partners:
SPO2024
Aminotransferase; 'initially identified as a pseudogene, expression verified by proteomics'.
  
  
 0.659
ccoN-1
Cytochrome c oxidase, cbb3-type, subunit I; Identified by similarity to SP:P98059; match to protein family HMM PF00115; match to protein family HMM TIGR00780; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.566
SPO0431
Hypothetical protein; Identified by similarity to PIR:E82090.
       0.544
SPO1089
Hypothetical protein; Identified by similarity to GB:AAN33382.1; match to protein family HMM PF04325.
   
    0.534
SPO2944
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.534
dksA
dnaK suppressor protein, putative; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.454
petC
Ubiquinol--cytochrome c reductase, cytochrome c1; Identified by similarity to SP:Q02760; match to protein family HMM PF02167.
   
  
 0.447
SPO1683
Hypothetical protein; Identified by similarity to GB:AAK22449.1.
  
  
 0.447
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
   
  
 0.426
ctaD
Cytochrome c oxidase, aa3-type, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
     
 0.420
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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