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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0443Hypothetical protein; Identified by similarity to GB:BAC62291.1. (72 aa)    
Predicted Functional Partners:
SPO1525
Transporter, AcrB/AcrD/AcrF family; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.782
SPO1526
Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P75830; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.747
SPO0442
Thioredoxin.
 
   
 0.667
sodB
Superoxide dismutase, Fe; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.641
SPO2634
Sulfite reductase, putative; Identified by match to protein family HMM PF01077; match to protein family HMM PF03460.
   
 
 0.641
cysH
Phosophoadenylyl-sulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
     
 0.615
soxD
Diheme cytochrome c SoxD; Identified by similarity to PIR:T46966; match to protein family HMM PF00034.
  
  
 0.598
soxY
Sulfur oxidation Y protein; Identified by similarity to GB:CAB94380.1; match to protein family HMM TIGR01409.
     
 0.595
soxZ
Sulfur oxidation Z protein; Identified by similarity to GB:CAB94381.1.
     
 0.595
soxA
Diheme cytochrome c SoxA; Identified by similarity to GB:AAF99434.1.
  
  
 0.594
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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