STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacBD-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666. (496 aa)    
Predicted Functional Partners:
SPO2739
D-alanyl-D-alanine carboxypeptidase; Identified by similarity to SP:P08506; match to protein family HMM PF00768; Belongs to the peptidase S11 family.
     
 0.915
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
  
 0.730
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.681
SPO3129
Hypothetical protein; Identified by similarity to GB:AAK22332.1.
  
     0.671
SPO0621
Ankrin repeat protein.
   
 
 0.667
SPO2205
Identified by match to protein family HMM PF03734.
 
  
 0.613
SPO0075
ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein; Identified by match to protein family HMM PF03734.
 
  
 0.610
SPO0373
Helicase, ATP-dependent, putative.
 
     0.586
mreC
Rod shape-determining protein MreC; Identified by similarity to SP:P16926; match to protein family HMM PF04085; match to protein family HMM TIGR00219.
  
   
 0.576
SPO0450
Membrane protein, putative.
       0.550
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.