STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0452Hypothetical protein; Identified by similarity to PIR:AD3572. (140 aa)    
Predicted Functional Partners:
SPO3348
Hypothetical protein; Identified by similarity to GB:CAD85590.1.
  
     0.657
lysS
lysyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.620
SPO3129
Hypothetical protein; Identified by similarity to GB:AAK22332.1.
  
     0.595
SPO1108
DnaJ-like protein DjlA, putative; Identified by similarity to SP:P31680; match to protein family HMM PF00226.
  
     0.584
SPO3851
HemY domain protein; Identified by match to protein family HMM PF07219.
 
   
 0.560
dddW
DMSP lyase; Able to cleave dimethlysulfonioproprionate (DMSP), releasing dimethyl sulfide (DMS) and acrylate. DMS is the principal form by which sulfur is transported from oceans to the atmosphere.
  
    0.551
SPO3434
Hypothetical protein; Identified by similarity to GB:CAE25733.1.
  
     0.523
SPO1267
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
  
     0.506
SPO3172
Hypothetical protein; Identified by similarity to GB:BAC46776.1.
  
     0.462
SPO0386
Identified by match to protein family HMM PF00582.
  
     0.433
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.