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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSlysyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (548 aa)    
Predicted Functional Partners:
SPO3566
Hypothetical protein; Identified by similarity to GB:CAC47907.1.
  
    0.792
SPO0454
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.675
SPO1907
Hypothetical protein; Identified by similarity to GB:AAK24073.1.
  
     0.670
SPO0457
Hypothetical protein; Identified by similarity to GB:BAC47480.1.
       0.644
SPO3886
Transporter, Tim44 family; Identified by similarity to PIR:AG3508; match to protein family HMM PF04280.
  
     0.624
SPO0452
Hypothetical protein; Identified by similarity to PIR:AD3572.
       0.620
SPO2056
Thiamine-phosphate pyrophosphorylase, putative; Identified by similarity to SP:P39594.
  
     0.584
gltX-1
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
  
  
 0.559
SPO0956
Hypothetical protein; Identified by similarity to PIR:AI3454.
  
    0.521
SPO0456
Hypothetical protein.
       0.512
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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