Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO0462Antibiotic biosynthesis monooxygenase domain protein. (108 aa)    
Predicted Functional Partners:
SPO0461
ParA family protein.
 
    0.698
SPO0941
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.620
SPO0463
Universal stress family protein.
 
     0.604
SPO0021
Hpt domain protein; Identified by match to protein family HMM PF01627.
  
     0.602
SPO0980
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.484
SPO0460
Hypothetical protein; Identified by Glimmer2; putative.
       0.477
SPO2514
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.473
SPO0672
Hypothetical protein; Identified by similarity to PIR:AH2953.
  
     0.465
SPO1120
Hypothetical protein; Identified by similarity to PIR:T10512.
 
     0.462
SPO2346
Sarcosine oxidase, delta subunit family; Identified by similarity to SP:Q46336; match to protein family HMM PF04267.
   
    0.437
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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