STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0465Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243. (160 aa)    
Predicted Functional Partners:
SPO0466
Transporter, formate/nitrate family; Identified by similarity to SP:P21501.
       0.773
SPO3287
Ferric iron ABC transporter, periplasmic ferric iron-binding protein; Identified by match to protein family HMM PF01547.
   
    0.727
SPO0467
Transcriptional regulator, GntR family.
     
 0.604
pdxJ
Pyridoxal phosphate biosynthetic protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
     
  0.499
SPO2975
Membrane protein, putative; Identified by similarity to GB:BAB51018.1.
  
     0.480
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.
     
 0.452
phnG
Alkylphosphonate utilization protein PhnG; Identified by similarity to SP:P16685.
       0.433
phnH
Alkylphosphonate utilization protein PhnH; Identified by similarity to SP:P16686.
       0.433
phnI
Alkylphosphonate utilization protein PhnI; Identified by similarity to SP:P16687.
       0.433
SPO2184
Hypothetical protein; Identified by similarity to SP:P55495.
  
    0.411
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.