STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0475Hypothetical protein; Identified by similarity to GB:AAN29788.1. (227 aa)    
Predicted Functional Partners:
phnM
Alkylphosphonate utilization protein PhnM; Identified by similarity to SP:P16689.
 
     0.906
SPO0891
Alkylphosphonate utilization protein PhnM, putative; Identified by similarity to SP:P16689; match to protein family HMM PF01979.
 
     0.801
phnI
Alkylphosphonate utilization protein PhnI; Identified by similarity to SP:P16687.
 
     0.787
phnG
Alkylphosphonate utilization protein PhnG; Identified by similarity to SP:P16685.
 
     0.786
phnH
Alkylphosphonate utilization protein PhnH; Identified by similarity to SP:P16686.
 
     0.771
phnJ
Alkylphosphonate utilization protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
     0.770
phnK
Alkylphosphonate utilization protein PhnK; Identified by similarity to SP:P16678.
 
     0.769
phnL
Alkylphosphonate utilization protein PhnL; Identified by similarity to SP:P16679.
 
     0.759
phnN
Alkylphosphonate utilization protein PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).
 
     0.706
SPO1352a
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG003; not identified in other Roseobacter strains'.
   
   0.614
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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