STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0482NADH-ubiquinone oxidoreductase family protein. (103 aa)    
Predicted Functional Partners:
SPO3260
Methyltransferase-like protein; Identified by similarity to GB:AAD44211.1.
  
  
 0.828
SPO1006
NADH dehydrogenase subunit, putative; Identified by similarity to SP:O97725; match to protein family HMM PF05071.
  
    0.810
SPO0481
Acetyltransferase, GNAT family.
       0.777
SPO0072
Hypothetical protein; Identified by similarity to GB:CAE26039.1.
 
     0.754
nuoG
NADH dehydrogenase I, G subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.
  
    0.751
SPO0518
Hypothetical protein; Identified by similarity to GB:BAC50629.1.
  
     0.716
cycM
Cytochrome c552; Identified by similarity to SP:P54820; match to protein family HMM PF00034.
  
     0.665
SPO0907
Hypothetical protein; Identified by similarity to GB:BAB49749.1; match to protein family HMM PF02636.
 
     0.652
SPO1285
Hypothetical protein; Identified by similarity to GB:CAE25485.1.
 
     0.610
recO
DNA repair protein RecO, putative; Involved in DNA repair and RecF pathway recombination.
 
     0.589
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.