STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0490Calcium-binding domain protein; Identified by similarity to GB:AAO08434.1. (333 aa)    
Predicted Functional Partners:
SPO0491
Hypothetical protein; Identified by similarity to GB:CAE79871.1.
 
   
 0.760
SPO2852
czcN domain protein; Identified by similarity to SP:P94139.
 
     0.496
SPO0491a
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG018; similar gene identified in less than 5 other Roseobacter strains'.
       0.473
SPO1394
Beta-lactamase, putative; Identified by match to protein family HMM PF00144; match to protein family HMM PF00353.
  
  
 0.419
SPO3515
Hypothetical protein; Identified by similarity to GB:AAR38409.1.
 
 
 0.411
SPO2921
Hypothetical protein; Identified by similarity to GB:AAA70414.1.
  
     0.410
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.