STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0491Hypothetical protein; Identified by similarity to GB:CAE79871.1. (206 aa)    
Predicted Functional Partners:
SPO0490
Calcium-binding domain protein; Identified by similarity to GB:AAO08434.1.
 
   
 0.760
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
      0.665
SPO3144
Hypothetical protein; Identified by similarity to GB:BAB48071.1.
  
     0.660
SPO0491a
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG018; similar gene identified in less than 5 other Roseobacter strains'.
       0.620
SPO0665
SlyX protein, putative; Identified by similarity to SP:Q89SJ8.
  
     0.541
SPO0492
Cyclic nucleotide-binding domain protein; Identified by similarity to GB:BAC74954.1.
       0.417
rpmC
Ribosomal protein L29; Identified by similarity to SP:P04457; Belongs to the universal ribosomal protein uL29 family.
       0.403
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.