Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO0518Hypothetical protein; Identified by similarity to GB:BAC50629.1. (238 aa)    
Predicted Functional Partners:
SPO0517
HAD-superfamily hydrolase, subfamily IA, variant 1.
      0.915
rluC
Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
    0.901
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
    
 
 0.755
SPO1006
NADH dehydrogenase subunit, putative; Identified by similarity to SP:O97725; match to protein family HMM PF05071.
  
   
 0.734
SPO0482
NADH-ubiquinone oxidoreductase family protein.
  
     0.716
SPO0072
Hypothetical protein; Identified by similarity to GB:CAE26039.1.
  
     0.674
SPO2855
Cobalt chelatase, pCobT subunit; Identified by similarity to SP:P29934; match to protein family HMM TIGR01651.
  
     0.665
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.637
SPO0515
ATPase, AAA family.
       0.634
SPO0519
Glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding protein.
       0.599
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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