STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0519Glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding protein. (380 aa)    
Predicted Functional Partners:
SPO0521
Glutamate/glutamine/aspartate/asparagine ABC transporter, permease protein; Identified by similarity to SP:Q52665.
 
 0.991
SPO0522
Glutamate/glutamine/aspartate/asparagine ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52666.
 
 0.989
SPO0520
Glutamate/glutamine/aspartate/asparagine ABC transporter, permease protein; Identified by similarity to SP:Q52664.
 
 
 0.981
SPO2366
Amino acid ABC transporter, permease protein; Identified by similarity to SP:Q52665; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 0.967
SPO2365
Amino acid ABC transporter, permease protein; Identified by similarity to SP:Q52664; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
 0.964
SPO2367
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:Q52666; match to protein family HMM PF00005.
 
 0.958
SPO2362
Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:Q52663; Belongs to the bacterial solute-binding protein 3 family.
  
  
 
0.912
SPO2364
Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:Q52663.
  
  
 
0.903
rluC
Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.603
SPO0518
Hypothetical protein; Identified by similarity to GB:BAC50629.1.
       0.603
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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