Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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SPO0556UDP-glucose/GDP-mannose dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (436 aa)    
Predicted Functional Partners:
glmU
UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. In the C-terminal section; belongs to the transferase hexapeptide repeat family.
  
 
 0.931
SPO0554
Glycosyl transferase, group 1 family protein.
 
  
 0.866
SPO0553
Glycosyltransferase, group 1.
 
  
 0.865
SPO0550
Hypothetical protein; Identified by similarity to PIR:E95936.
 
    0.852
SPO0551
Hypothetical protein; Identified by similarity to PIR:B97670.
 
   
 0.821
SPO0555
Hypothetical protein; Identified by similarity to GB:BAB50184.1.
 
   
 0.821
SPO0549
Hypothetical protein; Identified by similarity to PIR:G97668.
 
     0.818
SPO0552
Phosphoglycerate mutase family protein.
       0.779
SPO0852
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408.
  
  
 0.677
SPO1533
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
  
 0.669
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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