Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO0558Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063. (383 aa)    
Predicted Functional Partners:
SPO0559
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42062.
 
 
 0.969
SPO0560
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Identified by similarity to GB:BAB50197.1.
 
 
 0.960
SPO0561
ABC transporter; 'initially identified as a pseudogene, expression verified by proteomics'; Belongs to the ABC transporter superfamily.
 
 0.933
SPO0703
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.885
SPO0705
Oligopeptide ABC transporter, permease protein; Assignment partly based on location in oligopeptide ABC transport gene cluster.
 
 
 0.862
SPO0702
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.842
naaC
N-acetyltaurine ABC transporter, ATP-binding protein; Identified by similarity to SP:P26905; PMID: 21757489; Belongs to the ABC transporter superfamily.
 
 0.840
naaC-2
N-acetyltaurine ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; PMID: 21757489; Belongs to the ABC transporter superfamily.
 
 0.836
SPO0562
Hypothetical protein; Identified by similarity to GB:BAB50200.1.
 
     0.826
SPO2832
Dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P24136; similarity to SP:P26905; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 0.818
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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