STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0559Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42062. (342 aa)    
Predicted Functional Partners:
SPO0558
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063.
 
 
 0.969
SPO0560
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Identified by similarity to GB:BAB50197.1.
 
 
 0.960
SPO0561
ABC transporter; 'initially identified as a pseudogene, expression verified by proteomics'; Belongs to the ABC transporter superfamily.
 
 
 0.903
SPO0704
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063.
 
 
 0.867
SPO2552
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01727; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.846
SPO0562
Hypothetical protein; Identified by similarity to GB:BAB50200.1.
 
     0.842
SPO0551
Hypothetical protein; Identified by similarity to PIR:B97670.
 
     0.771
SPO0574
ABC transporter, transmembrane ATP-binding protein, putative.
 
     0.771
SPO3815
ABC transporter, permease protein; Identified by similarity to GB:BAB50188.1; match to protein family HMM PF00027; match to protein family HMM PF00664.
 
     0.770
SPO0555
Hypothetical protein; Identified by similarity to GB:BAB50184.1.
 
     0.766
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.