STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0560Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Identified by similarity to GB:BAB50197.1. (638 aa)    
Predicted Functional Partners:
SPO0559
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42062.
 
 
 0.958
SPO0558
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063.
 
 
 0.956
SPO0562
Hypothetical protein; Identified by similarity to GB:BAB50200.1.
 
     0.868
SPO0561
ABC transporter; 'initially identified as a pseudogene, expression verified by proteomics'; Belongs to the ABC transporter superfamily.
 
  
 0.824
SPO0704
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063.
 
 
 0.804
SPO0574
ABC transporter, transmembrane ATP-binding protein, putative.
 
   
 0.788
SPO3815
ABC transporter, permease protein; Identified by similarity to GB:BAB50188.1; match to protein family HMM PF00027; match to protein family HMM PF00664.
 
   
 0.788
SPO0551
Hypothetical protein; Identified by similarity to PIR:B97670.
 
     0.775
SPO0555
Hypothetical protein; Identified by similarity to GB:BAB50184.1.
  
     0.774
SPO0550
Hypothetical protein; Identified by similarity to PIR:E95936.
 
     0.773
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.