Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO0562Hypothetical protein; Identified by similarity to GB:BAB50200.1. (173 aa)    
Predicted Functional Partners:
SPO0560
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Identified by similarity to GB:BAB50197.1.
 
     0.868
SPO0559
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42062.
 
     0.842
SPO0558
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063.
 
     0.826
SPO0550
Hypothetical protein; Identified by similarity to PIR:E95936.
 
     0.789
SPO0555
Hypothetical protein; Identified by similarity to GB:BAB50184.1.
 
     0.778
SPO0574
ABC transporter, transmembrane ATP-binding protein, putative.
  
     0.774
SPO3815
ABC transporter, permease protein; Identified by similarity to GB:BAB50188.1; match to protein family HMM PF00027; match to protein family HMM PF00664.
  
     0.774
SPO0551
Hypothetical protein; Identified by similarity to PIR:B97670.
 
     0.773
SPO0553
Glycosyltransferase, group 1.
  
     0.766
SPO0554
Glycosyl transferase, group 1 family protein.
  
     0.747
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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