STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0563Glutathione S-transferase, putative; Identified by similarity to SP:Q12390. (209 aa)    
Predicted Functional Partners:
SPO3494
Identified by match to protein family HMM PF00043; match to protein family HMM PF02798; Belongs to the GST superfamily.
   
 0.682
SPO0562
Hypothetical protein; Identified by similarity to GB:BAB50200.1.
 
     0.651
SPO0953
Hypothetical protein; Identified by similarity to GB:BAB49280.1.
   
 0.568
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.514
SPO0564
Aminomethyl transferase family protein; Belongs to the GcvT family.
     
 0.461
SPO1343
Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.
  
     0.451
SPO0565
Trimethylamine methyltransferase family protein; Belongs to the trimethylamine methyltransferase family.
       0.448
rpmD
Ribosomal protein L30; Identified by similarity to SP:Q9Z9J6.
  
 
 0.430
SPO0898
Hypothetical protein; Identified by similarity to PIR:AH1879.
  
     0.417
SPO0559
Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42062.
 
     0.413
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.