STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0568Pyruvate ferredoxin/flavodoxin oxidoreductase family protein. (1137 aa)    
Predicted Functional Partners:
SPO1800
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
  
  
 0.876
SPO1873
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558; match to protein family HMM PF02775.
 
 
0.792
SPO0833
Formate dehydrogenase, beta subunit; Identified by similarity to GB:AAN03798.1; match to protein family HMM PF01257; match to protein family HMM PF01512.
     
 0.713
SPO1555
Formate dehydrogenase, beta subunit; Identified by similarity to GB:AAN03798.1; match to protein family HMM PF01257; match to protein family HMM PF01512.
     
 0.713
boxA
benzoyl-CoA oxygenase, A subunit; Identified by similarity to GB:AAN39377.1; match to protein family HMM PF00037; match to protein family HMM PF00175.
  
  
 0.697
sat
Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
  
  
 0.674
SPO1498
Fumarate hydratase, class I, putative; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.651
SPO1777
Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.
     
 0.649
fadH
2,4-dienoyl-CoA reductase; Identified by similarity to SP:P42593; match to protein family HMM PF00070; match to protein family HMM PF00724.
  
  
 0.644
SPO1447
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF01796.
     
 0.640
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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