Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0570Hypothetical protein; Identified by similarity to GB:CAD14776.1. (778 aa)    
Predicted Functional Partners:
SPO0571
PKD domain protein.
 
  
 0.930
SPO0572
Adenylate/guanylate cyclase.
 
   
 0.886
SPO1271
Hypothetical protein; Identified by Glimmer2; putative.
 
 
   0.656
SPO0562
Hypothetical protein; Identified by similarity to GB:BAB50200.1.
  
     0.537
SPO0550
Hypothetical protein; Identified by similarity to PIR:E95936.
  
   
 0.488
SPO0549
Hypothetical protein; Identified by similarity to PIR:G97668.
  
     0.471
SPO0569
Transcriptional regulator, AsnC family.
       0.454
SPO0576
Transcriptional regulator, TetR family; Identified by similarity to GB:AAS05297.1.
  
     0.419
SPO3416
Identified by match to protein family HMM PF01580.
  
 
 0.419
SPO0574
ABC transporter, transmembrane ATP-binding protein, putative.
  
   
 0.414
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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