STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0574ABC transporter, transmembrane ATP-binding protein, putative. (1032 aa)    
Predicted Functional Partners:
pdhB
Pyruvate dehydrogenase complex, E1 component, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 
 0.841
SPO0557
Mechanosensitive ion channel family protein.
 
  
 0.820
SPO0901
Adenylate/guanylate cyclase; Identified by match to protein family HMM PF00111; match to protein family HMM PF00211.
 
 
 0.810
SPO0553
Glycosyltransferase, group 1.
 
 
 0.807
SPO0554
Glycosyl transferase, group 1 family protein.
 
 
 0.805
SPO0560
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Identified by similarity to GB:BAB50197.1.
 
   
 0.787
SPO0550
Hypothetical protein; Identified by similarity to PIR:E95936.
 
   
 0.786
SPO0551
Hypothetical protein; Identified by similarity to PIR:B97670.
 
     0.782
SPO0555
Hypothetical protein; Identified by similarity to GB:BAB50184.1.
 
     0.782
SPO1871
Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924.
 
  
 0.778
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.