STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acdA-1acyl-CoA dehydrogenase. (385 aa)    
Predicted Functional Partners:
fabJ-1
Fatty oxidation complex, alpha subunit; Identified by similarity to SP:P77399; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.
 
 0.977
SPO3646
Identified by match to protein family HMM PF00378.
 
 0.945
etfA
Electron transfer flavoprotein, alpha subunit; Identified by similarity to SP:P38974.
 
 0.926
gcdH
glutaryl-CoA dehydrogenase; Identified by similarity to SP:Q92947; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.
  
  
 
0.923
mccB
methylcrotonyl-CoA carboxylase, beta subunit; Identified by similarity to SP:Q9HCC0; match to protein family HMM PF01039.
 
 
 0.921
SPO2540
Carbamoyl-phosphate synthase, putative; Identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786.
  
 0.919
mccA
methylcrotonyl-CoA carboxylase, alpha subunit; Identified by similarity to SP:Q96RQ3; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786.
  
 0.919
SPO0772
enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.864
SPO2918
acetyl-CoA acyltransferase/thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
 0.810
bktB
Beta-ketothiolase; Identified by similarity to GB:AAC38322.1; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.779
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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