STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0576Transcriptional regulator, TetR family; Identified by similarity to GB:AAS05297.1. (209 aa)    
Predicted Functional Partners:
SPO0581
Hypothetical protein; Identified by similarity to GB:CAB95889.1.
 
     0.842
acdA-1
acyl-CoA dehydrogenase.
       0.773
SPO0577
Hypothetical protein; Identified by similarity to PIR:D83286.
 
   
 0.706
SPO0580
Oxidoreductase, 2-nitropropane dioxygenase family.
 
     0.686
SPO0579
acetyl-CoA carboxylase, biotin carboxylase, putative; Identified by similarity to GB:BAB16297.1.
   
 
 0.558
SPO0578
acetyl-CoA carboxylase carboxyltransferase; Identified by similarity to GB:BAB16296.1.
     
 0.531
SPO0572
Adenylate/guanylate cyclase.
 
 
 
 0.513
SPO2208
Hypothetical protein; Identified by similarity to GB:BAB53466.1.
  
     0.498
SPO0570
Hypothetical protein; Identified by similarity to GB:CAD14776.1.
  
    0.421
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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