STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0577Hypothetical protein; Identified by similarity to PIR:D83286. (587 aa)    
Predicted Functional Partners:
SPO0581
Hypothetical protein; Identified by similarity to GB:CAB95889.1.
 
     0.897
SPO0578
acetyl-CoA carboxylase carboxyltransferase; Identified by similarity to GB:BAB16296.1.
 
  
 0.890
SPO0579
acetyl-CoA carboxylase, biotin carboxylase, putative; Identified by similarity to GB:BAB16297.1.
  
  
 0.827
SPO0580
Oxidoreductase, 2-nitropropane dioxygenase family.
 
   
 0.825
hmgA
Homogentisate 1,2-dioxygenase; Identified by similarity to SP:Q9X4F5.
 
 
 0.754
SPO0576
Transcriptional regulator, TetR family; Identified by similarity to GB:AAS05297.1.
 
     0.704
SPO1030
Identified by match to protein family HMM PF00753.
    
 0.669
acdA-1
acyl-CoA dehydrogenase.
 
  
 0.666
acdA-2
acyl-CoA dehydrogenase.
 
  
 0.626
SPO1498
Fumarate hydratase, class I, putative; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
    0.529
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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