STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
SPO0579acetyl-CoA carboxylase, biotin carboxylase, putative; Identified by similarity to GB:BAB16297.1. (660 aa)    
Predicted Functional Partners:
SPO0578
acetyl-CoA carboxylase carboxyltransferase; Identified by similarity to GB:BAB16296.1.
 0.998
SPO2541
propionyl-CoA carboxylase, putative; Identified by similarity to GB:AAD28194.1; match to protein family HMM PF01039.
 
 0.964
pccB
propionyl-CoA carboxylase, beta subunit; Identified by similarity to PIR:T42208; match to protein family HMM PF01039.
 
 0.963
mccB
methylcrotonyl-CoA carboxylase, beta subunit; Identified by similarity to SP:Q9HCC0; match to protein family HMM PF01039.
 0.952
SPO1489
Indole acetamide hydrolase; Identified by similarity to SP:Q09102.
    
 0.894
SPO3418
Identified by match to protein family HMM PF01425; Belongs to the amidase family.
    
 0.873
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
 
 0.831
SPO0577
Hypothetical protein; Identified by similarity to PIR:D83286.
  
  
 0.827
SPO0580
Oxidoreductase, 2-nitropropane dioxygenase family.
 
    0.808
SPO0581
Hypothetical protein; Identified by similarity to GB:CAB95889.1.
       0.781
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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