Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO0581Hypothetical protein; Identified by similarity to GB:CAB95889.1. (263 aa)    
Predicted Functional Partners:
SPO0580
Oxidoreductase, 2-nitropropane dioxygenase family.
 
     0.914
SPO0577
Hypothetical protein; Identified by similarity to PIR:D83286.
 
     0.897
SPO0576
Transcriptional regulator, TetR family; Identified by similarity to GB:AAS05297.1.
 
     0.842
SPO0578
acetyl-CoA carboxylase carboxyltransferase; Identified by similarity to GB:BAB16296.1.
       0.781
SPO0579
acetyl-CoA carboxylase, biotin carboxylase, putative; Identified by similarity to GB:BAB16297.1.
       0.781
SPO3393
Hypothetical protein; Identified by similarity to GB:BAC68979.1.
  
     0.673
acdA-1
acyl-CoA dehydrogenase.
 
     0.627
acdA-2
acyl-CoA dehydrogenase.
       0.519
SPO1957
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by similarity to GB:AAR05249.1; match to protein family HMM PF00106.
  
     0.481
SPO0289
Identified by match to protein family HMM PF00149.
  
     0.458
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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