Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO0587Hypothetical protein; Identified by similarity to GB:CAC46788.1. (425 aa)    
Predicted Functional Partners:
SPO0585
Dehydrogenase/transketolase family protein.
  
    0.639
SPO0586
Acyl-carrier domain protein; Identified by similarity to PIR:T00580.
       0.631
aspC-1
Aspartate aminotransferase; Identified by similarity to SP:Q06191.
       0.622
SPO1586
Sarcosine oxidase, alpha subunit family; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372; Belongs to the GcvT family.
  
 
 0.550
SPO1746
Sarcosine oxidase, alpha subunit family; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372; Belongs to the GcvT family.
  
 
 0.550
SPO2345
Sarcosine oxidase, alpha subunit family; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM TIGR01372; Belongs to the GcvT family.
  
 
 0.550
SPO0583
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.524
SPO2837
Hypothetical protein; Identified by similarity to GB:BAB51661.1.
 
  
 0.521
SPO1300
Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
 
  
 0.488
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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