Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hpsRTranscriptional regulator, LacI family; PMID: 20150239. (342 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.
    
 
 0.853
SPO0715
Phosphocarrier protein HPr.
 
 
 
 0.829
hpsK
Dihydroxypropanesulfonate (DHPS) TRAP transporter; Identified by similarity to SP:P37735; PMID: 20150239.
 
     0.780
hpsP
S or R-dihydroxypropanesulfonate-2-dehydrogenase; PMID: 20150239.
 
 
 
 0.743
hpsO
R or S-dihydroxypropanesulfonate-2-dehydrogenase; Identified by similarity to SP:P50199; PMID: 20150239.
 
 
 
 0.712
hpsL
Dihydroxypropanesulfonate (DHPS) TRAP transporter; PMID: 20150239.
 
     0.688
hpsN
Dihydroxypropanesulfonate-3-dehydrogenase; Catalyzes the NAD-dependent oxidation of (R)-2,3- dihydroxypropane-1-sulfonate to (R)-3-sulfolactate.
 
   
 0.688
gnl
Gluconolactonase; Identified by similarity to SP:Q01578; match to protein family HMM PF03758.
  
  
 0.615
hpsM
Dihydroxypropanesulfonate (DHPS) TRAP transporter; PMID: 20150239.
 
     0.550
sat
Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
   
   0.548
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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