STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpsKDihydroxypropanesulfonate (DHPS) TRAP transporter; Identified by similarity to SP:P37735; PMID: 20150239. (381 aa)    
Predicted Functional Partners:
hpsL
Dihydroxypropanesulfonate (DHPS) TRAP transporter; PMID: 20150239.
 
  
 0.920
hpsM
Dihydroxypropanesulfonate (DHPS) TRAP transporter; PMID: 20150239.
 
  
 0.904
hpsO
R or S-dihydroxypropanesulfonate-2-dehydrogenase; Identified by similarity to SP:P50199; PMID: 20150239.
 
     0.859
hpsP
S or R-dihydroxypropanesulfonate-2-dehydrogenase; PMID: 20150239.
 
   
 0.859
hpsR
Transcriptional regulator, LacI family; PMID: 20150239.
 
     0.780
hpsN
Dihydroxypropanesulfonate-3-dehydrogenase; Catalyzes the NAD-dependent oxidation of (R)-2,3- dihydroxypropane-1-sulfonate to (R)-3-sulfolactate.
 
     0.681
iseL
Isethionate TRAP transporter; Identified by match to protein family HMM PF04290; PMID: 19933343.
 
  
 0.573
iseM
Isethionate TRAP transporter; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; PMID: 19933343.
 
  
 0.551
hpsQ
UspA stress protein; PMID: 20150239.
       0.526
uehC
Ectoine/5-hydroxyectoine TRAP transporter, periplasmic binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system UehABC, which imports both ectoine and 5- hydroxyectoine as nutrients, and not as osmoprotectants. Belongs to the TRAP transporter large permease family.
 
  
 0.491
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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