Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hpsLDihydroxypropanesulfonate (DHPS) TRAP transporter; PMID: 20150239. (180 aa)    
Predicted Functional Partners:
hpsM
Dihydroxypropanesulfonate (DHPS) TRAP transporter; PMID: 20150239.
 
 
 0.959
hpsP
S or R-dihydroxypropanesulfonate-2-dehydrogenase; PMID: 20150239.
 
     0.921
hpsK
Dihydroxypropanesulfonate (DHPS) TRAP transporter; Identified by similarity to SP:P37735; PMID: 20150239.
 
  
 0.920
hpsO
R or S-dihydroxypropanesulfonate-2-dehydrogenase; Identified by similarity to SP:P50199; PMID: 20150239.
 
    0.912
hpsN
Dihydroxypropanesulfonate-3-dehydrogenase; Catalyzes the NAD-dependent oxidation of (R)-2,3- dihydroxypropane-1-sulfonate to (R)-3-sulfolactate.
 
     0.813
hpsQ
UspA stress protein; PMID: 20150239.
 
     0.762
hpsR
Transcriptional regulator, LacI family; PMID: 20150239.
 
     0.688
iseK
Isethionate TRAP transporter; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409; PMID: 19933343.
 
  
 0.653
iseM
Isethionate TRAP transporter; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; PMID: 19933343.
 
 
 0.641
slcD
Membrane-bound sulfolactate dehydrogenase; PMID: 19581363.
       0.606
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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