STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpsPS or R-dihydroxypropanesulfonate-2-dehydrogenase; PMID: 20150239. (332 aa)    
Predicted Functional Partners:
hpsO
R or S-dihydroxypropanesulfonate-2-dehydrogenase; Identified by similarity to SP:P50199; PMID: 20150239.
 
  
 0.939
hpsL
Dihydroxypropanesulfonate (DHPS) TRAP transporter; PMID: 20150239.
 
     0.921
hpsN
Dihydroxypropanesulfonate-3-dehydrogenase; Catalyzes the NAD-dependent oxidation of (R)-2,3- dihydroxypropane-1-sulfonate to (R)-3-sulfolactate.
 
     0.881
hpsM
Dihydroxypropanesulfonate (DHPS) TRAP transporter; PMID: 20150239.
 
     0.867
hpsK
Dihydroxypropanesulfonate (DHPS) TRAP transporter; Identified by similarity to SP:P37735; PMID: 20150239.
 
   
 0.859
hpsQ
UspA stress protein; PMID: 20150239.
  
    0.775
hpsR
Transcriptional regulator, LacI family; PMID: 20150239.
 
 
 
 0.743
slcD
Membrane-bound sulfolactate dehydrogenase; PMID: 19581363.
  
  
 0.669
SPO0791
M23/M37 peptidase/aminotransferase, class III; Identified by match to protein family HMM PF00202; match to protein family HMM PF01551.
  
 
 0.586
SPO2960
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.
 
  
 0.464
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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