Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
slcDMembrane-bound sulfolactate dehydrogenase; PMID: 19581363. (371 aa)    
Predicted Functional Partners:
hpsN
Dihydroxypropanesulfonate-3-dehydrogenase; Catalyzes the NAD-dependent oxidation of (R)-2,3- dihydroxypropane-1-sulfonate to (R)-3-sulfolactate.
  
  
 0.750
hpsO
R or S-dihydroxypropanesulfonate-2-dehydrogenase; Identified by similarity to SP:P50199; PMID: 20150239.
  
 0.704
hpsM
Dihydroxypropanesulfonate (DHPS) TRAP transporter; PMID: 20150239.
    
  0.672
hpsP
S or R-dihydroxypropanesulfonate-2-dehydrogenase; PMID: 20150239.
  
  
 0.669
hpsQ
UspA stress protein; PMID: 20150239.
     
 0.647
hpsL
Dihydroxypropanesulfonate (DHPS) TRAP transporter; PMID: 20150239.
       0.606
tyrB
Aromatic amino acid aminotransferase; Identified by similarity to SP:P95468; match to protein family HMM PF00155.
     
 0.532
SPO1370
Identified by match to protein family HMM PF00266.
  
 0.486
SPO1567
Aminotransferase, putative.
  
 0.486
SPO3029
Serine--glyoxylate transaminase, putative; Identified by similarity to SP:O08374; match to protein family HMM PF00266.
  
 0.486
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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