STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. (661 aa)    
Predicted Functional Partners:
speB-1
Agmatinase; Belongs to the arginase family.
 
 
 0.983
SPO2980
Porphyromonas-type peptidyl-arginine deiminase family protein; Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family.
    
 0.935
SPO0678
Agmatinase, putative; Identified by similarity to SP:Q9BSE5; Belongs to the arginase family.
  
 
 0.922
speB-3
Agmatinase; Identified by similarity to SP:P16936; match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.
  
 
 0.922
rocF
Arginase; Identified by similarity to SP:Q59174; match to protein family HMM PF00491; match to protein family HMM TIGR01229; Belongs to the arginase family.
  
 
 0.921
aspC-3
Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.
  
 
  0.905
SPO0601
Saccharopine dehydrogenase.
 
   
 0.885
nspC
Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
 
  
 0.864
argH
Argininosuccinate lyase; Identified by similarity to SP:P59615; match to protein family HMM PF00206; match to protein family HMM TIGR00838.
     
 0.834
speB-2
Agmatinase; Identified by similarity to SP:Q9BSE5; match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.
  
 
 0.610
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.