STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0606Hypothetical protein; Identified by similarity to PIR:C95874. (562 aa)    
Predicted Functional Partners:
SPO0607
Proline racemase, putative; Identified by similarity to GB:CAB71312.1; Belongs to the proline racemase family.
 
 
 0.997
SPO1594
Mandelate racemase/muconate lactonizing enzyme, putative; Identified by similarity to SP:P27099; match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
    
  0.901
SPO1595
Mandelate racemase/muconate lactonizing enzyme; Identified by similarity to SP:P95608; match to protein family HMM PF01188; match to protein family HMM PF02746.
    
  0.901
SPO1603
Identified by match to protein family HMM PF02615; Belongs to the LDH2/MDH2 oxidoreductase family.
 
   
 0.603
comC
(2R)-3-sulfolactate dehydrogenase; Identified by match to protein family HMM PF02615; PMID: 19581363; Belongs to the LDH2/MDH2 oxidoreductase family.
 
   
 0.575
SPO0608
Sugar ABC transporter, periplasmic sugar-binding protein; Assignment partly based on location in sugar transporter operon.
       0.509
SPO0605
Transcriptional regulator, MarR family.
 
     0.502
SPO1097
Hypothetical protein; Identified by similarity to PIR:C98286.
  
     0.456
SPO0604
Hypothetical protein; Identified by similarity to GB:BAC62948.1.
       0.432
SPO0164
Oxidoreductase, FMN-binding/pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00724.
     
 0.404
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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