STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0607Proline racemase, putative; Identified by similarity to GB:CAB71312.1; Belongs to the proline racemase family. (341 aa)    
Predicted Functional Partners:
SPO0606
Hypothetical protein; Identified by similarity to PIR:C95874.
 
 
 0.997
SPO1594
Mandelate racemase/muconate lactonizing enzyme, putative; Identified by similarity to SP:P27099; match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
    
 0.908
SPO1595
Mandelate racemase/muconate lactonizing enzyme; Identified by similarity to SP:P95608; match to protein family HMM PF01188; match to protein family HMM PF02746.
    
 0.908
SPO3832
Identified by match to protein family HMM PF02423.
 
   
 0.600
SPO3821
Identified by match to protein family HMM PF02423.
 
   
 0.537
SPO0608
Sugar ABC transporter, periplasmic sugar-binding protein; Assignment partly based on location in sugar transporter operon.
       0.509
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro); Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 2 subfamily.
      
 0.445
SPO0604
Hypothetical protein; Identified by similarity to GB:BAC62948.1.
       0.432
SPO0605
Transcriptional regulator, MarR family.
       0.432
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.