STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
SPO0608Sugar ABC transporter, periplasmic sugar-binding protein; Assignment partly based on location in sugar transporter operon. (592 aa)    
Predicted Functional Partners:
SPO0612
Sugar ABC transporter, permease protein; Assignment partly based on location in sugar transport operon.
 
 0.994
SPO0611
Sugar ABC transporter, permease protein; Assignment partly based on location in sugar transport operon; identified by similarity to PIR:T46751.
 
 0.989
SPO0609
Sugar ABC transporter, ATP-binding protein; Assignment partly based on location in sugar transport operon; Belongs to the ABC transporter superfamily.
 
 0.988
SPO0610
Sugar ABC transporter, ATP-binding protein; Assignment partly based on location in sugar transport operon; Belongs to the ABC transporter superfamily.
 
 0.988
SPO0613
Hypothetical protein; Identified by similarity to GB:BAB48242.1.
 
    0.921
SPO1837
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 
 0.606
SPO1835
Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
  
 
 0.604
ugpA
SN-glycerol-3-phosphate ABC transporter, permease protein; Identified by similarity to SP:P10905; match to protein family HMM PF00528.
  
 
 0.570
SPO1822
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 
 0.570
SPO1838
Sugar ABC transporter, permease protein; Identified by similarity to SP:P29823; match to protein family HMM PF00528.
  
 
 0.570
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.