STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0609Sugar ABC transporter, ATP-binding protein; Assignment partly based on location in sugar transport operon; Belongs to the ABC transporter superfamily. (354 aa)    
Predicted Functional Partners:
SPO0611
Sugar ABC transporter, permease protein; Assignment partly based on location in sugar transport operon; identified by similarity to PIR:T46751.
 
 0.994
SPO0612
Sugar ABC transporter, permease protein; Assignment partly based on location in sugar transport operon.
 0.993
SPO0608
Sugar ABC transporter, periplasmic sugar-binding protein; Assignment partly based on location in sugar transporter operon.
 
 0.987
SPO0610
Sugar ABC transporter, ATP-binding protein; Assignment partly based on location in sugar transport operon; Belongs to the ABC transporter superfamily.
 
  
 
0.964
SPO0613
Hypothetical protein; Identified by similarity to GB:BAB48242.1.
 
    0.944
SPO0615
Hypothetical protein; Identified by similarity to GB:CAD73596.1.
 
     0.771
ugpE
SN-glycerol-3-phosphate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 0.713
SPO3786
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.702
SPO3785
Sugar ABC transporter, permease protein; Identified by similarity to PIR:T46751; match to protein family HMM PF00528.
 
 
 0.689
SPO0614
Transcriptional regulator, putative; Identified by similarity to SP:P06555.
 
     0.655
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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