Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO0611Sugar ABC transporter, permease protein; Assignment partly based on location in sugar transport operon; identified by similarity to PIR:T46751. (287 aa)    
Predicted Functional Partners:
SPO0612
Sugar ABC transporter, permease protein; Assignment partly based on location in sugar transport operon.
 0.996
SPO0609
Sugar ABC transporter, ATP-binding protein; Assignment partly based on location in sugar transport operon; Belongs to the ABC transporter superfamily.
 
 0.994
SPO0610
Sugar ABC transporter, ATP-binding protein; Assignment partly based on location in sugar transport operon; Belongs to the ABC transporter superfamily.
 
 0.994
SPO0608
Sugar ABC transporter, periplasmic sugar-binding protein; Assignment partly based on location in sugar transporter operon.
 
 0.989
SPO0613
Hypothetical protein; Identified by similarity to GB:BAB48242.1.
 
    0.946
SPO3786
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.806
SPO1837
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.779
SPO1821
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.736
upgC
SN-glycerol-3-phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 
 
 0.711
SPO1835
Sugar ABC transporter, ATP-binding protein; Identified by similarity to GB:AAC04471.1; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 0.696
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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