Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO0614Transcriptional regulator, putative; Identified by similarity to SP:P06555. (131 aa)    
Predicted Functional Partners:
SPO0615
Hypothetical protein; Identified by similarity to GB:CAD73596.1.
 
  
 0.977
SPO0794
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.921
SPO0613
Hypothetical protein; Identified by similarity to GB:BAB48242.1.
 
     0.688
SPO0609
Sugar ABC transporter, ATP-binding protein; Assignment partly based on location in sugar transport operon; Belongs to the ABC transporter superfamily.
 
     0.654
SPO0616
Oxidoreductase, zinc-binding dehydrogenase family.
       0.545
SPO0612
Sugar ABC transporter, permease protein; Assignment partly based on location in sugar transport operon.
       0.542
SPO0610
Sugar ABC transporter, ATP-binding protein; Assignment partly based on location in sugar transport operon; Belongs to the ABC transporter superfamily.
       0.528
SPO0611
Sugar ABC transporter, permease protein; Assignment partly based on location in sugar transport operon; identified by similarity to PIR:T46751.
       0.528
SPO0608
Sugar ABC transporter, periplasmic sugar-binding protein; Assignment partly based on location in sugar transporter operon.
 
     0.453
SPO3452a
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG015; similar gene identified in less than 5 other Roseobacter strains'.
  
     0.424
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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