Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0624Hypothetical protein; Identified by similarity to PIR:B75629. (208 aa)    
Predicted Functional Partners:
SPO0623
Cytochrome c oxidase domain protein.
 
     0.820
ubiG
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
   
   0.594
SPO2625
Hypothetical protein; Identified by similarity to GB:AAM40972.1.
   
   0.594
SPO2690
Hypothetical protein; Identified by similarity to GB:CAB61860.1.
   
   0.594
SPO3132
Hypothetical protein; Identified by similarity to GB:AAQ87450.1.
   
   0.594
SPO3211
Hypothetical protein; Identified by similarity to GB:AAK23900.1.
   
   0.594
SPO0622
ISSpo1, transposase.
       0.535
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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