STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0631Hypothetical protein. (174 aa)    
Predicted Functional Partners:
SPO1907
Hypothetical protein; Identified by similarity to GB:AAK24073.1.
  
     0.686
SPO2850
DnaJ domain protein; Identified by match to protein family HMM PF00226.
  
     0.671
SPO0909
Hypothetical protein; Identified by similarity to GB:CAC46921.1; match to protein family HMM PF04380.
  
     0.645
SPO3566
Hypothetical protein; Identified by similarity to GB:CAC47907.1.
  
     0.620
SPO1033
Hypothetical protein; Identified by similarity to GB:BAB50739.1.
  
     0.616
recO
DNA repair protein RecO, putative; Involved in DNA repair and RecF pathway recombination.
  
     0.600
SPO3886
Transporter, Tim44 family; Identified by similarity to PIR:AG3508; match to protein family HMM PF04280.
  
     0.595
SPO0632
D-isomer specific 2-hydroxyacid dehydrogenase family protein.
       0.558
SPO1420
Transcriptional regulator, CarD family; Identified by match to protein family HMM PF02559.
  
     0.523
SPO3764
Identified by match to protein family HMM PF02798.
  
    0.505
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.