Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0638Hypothetical protein; Identified by similarity to GB:AAO90814.1. (205 aa)    
Predicted Functional Partners:
SPO3380
Gamma-butyrobetaine hydroxylase, putative; Identified by similarity to SP:P80193; match to protein family HMM PF03322.
     0.902
SPO0637
Hypothetical protein; Identified by Glimmer2; putative.
       0.671
SPO0639
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.612
SPO0636
EF hand domain protein.
       0.534
SPO1554
Identified by match to protein family HMM PF00909.
  
     0.476
SPO3749
Class II aldolase/adducin N-terminal domain protein; Identified by match to protein family HMM PF00596.
 
     0.428
phnJ
Alkylphosphonate utilization protein PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
  
    0.404
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: high (86%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.